title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Astrocitos_F {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/MA_HC_Astrocitos_F.RData")
```ENSG00000038427
Statistics of ENSG00000038427 meta-analisys
kable(sig.genes.df['ENSG00000038427',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000038427 | VCAN | 1.335629 | 1.583435 | 1.83124 | 0 | 0.3660156 | 0.8327617 | 0.1264339 | 0 | 0 | 1 | 0 | 0 | 31.42187 | 3 | 3 | non | 0.8234809 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000038427_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000038427_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000038427_INFLUENCE.png")
ENSG00000059728
Statistics of ENSG00000059728 meta-analisys
kable(sig.genes.df['ENSG00000059728',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000059728 | MXD1 | 0.1714074 | 0.2320145 | 0.2926216 | 0 | 0.9995882 | 0.6066555 | 0.0309225 | 0 | 0 | 1 | 0 | 0 | 10.14812 | 3 | 3 | syn52293442_hc | 0.5920153 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000059728_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000059728_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000059728_INFLUENCE.png")
ENSG00000090989
Statistics of ENSG00000090989 meta-analisys
kable(sig.genes.df['ENSG00000090989',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000090989 | EXOC1 | 0.5022682 | 0.6853532 | 0.8684382 | 0 | 2.029357 | 0.362519 | 0.0934124 | 0.0004367 | 1.446594 | 1.014678 | 0 | 0 | 9.637808 | 3 | 3 | GSE163577,syn52293442_hc | 0.8218104 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000090989_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000090989_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000090989_INFLUENCE.png")
ENSG00000120693
Statistics of ENSG00000120693 meta-analisys
kable(sig.genes.df['ENSG00000120693',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000120693 | SMAD9 | 0.6288049 | 0.8067602 | 0.9847154 | 0 | 1.714869 | 0.4242492 | 0.0907952 | 0 | 0 | 1 | 0 | 0 | 14.96305 | 3 | 3 | GSE163577 | 0.578765 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000120693_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000120693_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000120693_INFLUENCE.png")
ENSG00000132470
Statistics of ENSG00000132470 meta-analisys
kable(sig.genes.df['ENSG00000132470',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000132470 | ITGB4 | 0.6166514 | 0.8622247 | 1.107798 | 0 | 0.9212866 | 0.6308777 | 0.1252948 | 0 | 0 | 1 | 0 | 0 | 8.346631 | 3 | 3 | Study43 | 0.8348331 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000132470_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000132470_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000132470_INFLUENCE.png")
ENSG00000136448
Statistics of ENSG00000136448 meta-analisys
kable(sig.genes.df['ENSG00000136448',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000136448 | NMT1 | 0.7546897 | 1.060589 | 1.366488 | 0 | 3.970454 | 0.1373494 | 0.1560738 | 0.0363574 | 49.62793 | 1.985227 | 0 | 1e-07 | 8.13131 | 3 | 3 | GSE163577,syn52293442_hc | 0.9260733 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000136448_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000136448_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000136448_INFLUENCE.png")
ENSG00000148655
Statistics of ENSG00000148655 meta-analisys
kable(sig.genes.df['ENSG00000148655',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000148655 | LRMDA | 1.751499 | 2.106598 | 2.461698 | 0 | 0.1673099 | 0.6825138 | 0.1811766 | 0 | 0 | 1 | 0 | 0 | 26.86459 | 2 | 2 | non | 0.8888391 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000148655_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000148655_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000148655_INFLUENCE.png")
ENSG00000150687
Statistics of ENSG00000150687 meta-analisys
kable(sig.genes.df['ENSG00000150687',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000150687 | PRSS23 | 0.2003005 | 0.2751142 | 0.3499279 | 0 | 1.133532 | 0.5673574 | 0.0381709 | 0 | 0 | 1 | 0 | 0 | 9.283725 | 3 | 3 | syn52293442_hc | 0.7713925 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000150687_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000150687_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000150687_INFLUENCE.png")
ENSG00000151914
Statistics of ENSG00000151914 meta-analisys
kable(sig.genes.df['ENSG00000151914',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151914 | DST | 0.6488087 | 0.8534701 | 1.058132 | 0 | 6.088635 | 0.0476288 | 0.104421 | 0.0212011 | 67.15192 | 3.044318 | 0 | 0 | 12.38665 | 3 | 3 | Study43,GSE163577 | 0.6005652 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000151914_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000151914_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000151914_INFLUENCE.png")
ENSG00000162390
Statistics of ENSG00000162390 meta-analisys
kable(sig.genes.df['ENSG00000162390',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000162390 | ACOT11 | -0.8453113 | -0.6648362 | -0.4843612 | 0 | 0.476063 | 0.7881779 | 0.0920808 | 0 | 0 | 1 | 0 | 0 | 9.294335 | 3 | 3 | GSE163577 | 0.7100229 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000162390_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000162390_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000162390_INFLUENCE.png")
ENSG00000165091
Statistics of ENSG00000165091 meta-analisys
kable(sig.genes.df['ENSG00000165091',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000165091 | TMC1 | 0.6349932 | 0.7990203 | 0.9630474 | 0 | 1.387598 | 0.4996743 | 0.0836888 | 0 | 0 | 1 | 0 | 0 | 17.51847 | 3 | 3 | GSE163577 | 0.6334753 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000165091_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000165091_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000165091_INFLUENCE.png")
ENSG00000171877
Statistics of ENSG00000171877 meta-analisys
kable(sig.genes.df['ENSG00000171877',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000171877 | FRMD5 | 1.924455 | 2.276168 | 2.62788 | 0 | 2.719803 | 0.256686 | 0.1794484 | 0.0307762 | 26.46527 | 1.359902 | 0 | 0 | 32.00447 | 3 | 3 | GSE163577 | 0.5785522 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000171877_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000171877_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000171877_INFLUENCE.png")
ENSG00000174501
Statistics of ENSG00000174501 meta-analisys
kable(sig.genes.df['ENSG00000174501',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000174501 | ANKRD36C | 0.6904835 | 0.8675161 | 1.044549 | 0 | 0.5193496 | 0.7713024 | 0.0903244 | 0 | 0 | 1 | 0 | 0 | 17.67859 | 3 | 3 | non | 0.8049762 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000174501_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000174501_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000174501_INFLUENCE.png")
ENSG00000182141
Statistics of ENSG00000182141 meta-analisys
kable(sig.genes.df['ENSG00000182141',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182141 | ZNF708 | 0.2684376 | 0.3741568 | 0.4798759 | 0 | 1.663679 | 0.4352479 | 0.0539393 | 0 | 0 | 1 | 0 | 0 | 8.490334 | 3 | 3 | syn52293442_hc | 0.5033838 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182141_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182141_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182141_INFLUENCE.png")
ENSG00000182287
Statistics of ENSG00000182287 meta-analisys
kable(sig.genes.df['ENSG00000182287',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182287 | AP1S2 | 0.2440552 | 0.3427034 | 0.4413517 | 0 | 0.0341777 | 0.9830563 | 0.0503317 | 0 | 0 | 1 | 0 | 1e-07 | 8.14966 | 3 | 3 | non | 0.6426429 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182287_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182287_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000182287_INFLUENCE.png")
ENSG00000183049
Statistics of ENSG00000183049 meta-analisys
kable(sig.genes.df['ENSG00000183049',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000183049 | CAMK1D | 0.5153801 | 0.6879835 | 0.8605869 | 0 | 0.9390261 | 0.6253067 | 0.0880646 | 0 | 0 | 1 | 0 | 0 | 11.15554 | 3 | 3 | non | 0.633748 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000183049_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000183049_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000183049_INFLUENCE.png")
ENSG00000184384
Statistics of ENSG00000184384 meta-analisys
kable(sig.genes.df['ENSG00000184384',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184384 | MAML2 | 0.8038135 | 1.018384 | 1.232955 | 0 | 0.8755026 | 0.6454863 | 0.1094768 | 0 | 0 | 1 | 0 | 0 | 16.57056 | 3 | 3 | GSE163577 | 0.8457396 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000184384_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000184384_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000184384_INFLUENCE.png")
ENSG00000196876
Statistics of ENSG00000196876 meta-analisys
kable(sig.genes.df['ENSG00000196876',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000196876 | SCN8A | 0.3009782 | 0.3932983 | 0.4856185 | 0 | 1.908813 | 0.3850407 | 0.047103 | 0 | 0 | 1 | 0 | 0 | 12.98281 | 3 | 3 | syn52293442_hc | 0.4193084 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000196876_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000196876_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000196876_INFLUENCE.png")
ENSG00000249859
Statistics of ENSG00000249859 meta-analisys
kable(sig.genes.df['ENSG00000249859',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000249859 | PVT1 | 0.4885602 | 0.6777563 | 0.8669524 | 0 | 3.847956 | 0.1460249 | 0.0965304 | 0.0135002 | 48.02435 | 1.923978 | 0 | 0 | 8.725321 | 3 | 3 | Study43,syn52293442_hc | 0.9313713 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000249859_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000249859_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000249859_INFLUENCE.png")
ENSG00000280809
Statistics of ENSG00000280809 meta-analisys
kable(sig.genes.df['ENSG00000280809',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000280809 | LINC00836 | 0.7235377 | 0.8899466 | 1.056356 | 0 | 3.335628 | 0.188659 | 0.0849041 | 0.0093155 | 40.04128 | 1.667814 | 0 | 0 | 21.44559 | 3 | 3 | Study43,syn52293442_hc | 0.7046959 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000280809_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000280809_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Astrocitos/F/plots/ENSG00000280809_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:42:20 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2